Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_04715 | Not Available | Positive | 1570074 - 1570520 | 15426.0 |
| hypothetical protein | ATY41_04720 | Not Available | Positive | 1570656 - 1571705 | 37731.6 |
| hypothetical protein | ATY41_04725 | Not Available | Positive | 1571764 - 1572411 | 23161.3 |
| hypothetical protein | ATY41_04730 | Not Available | Positive | 1572390 - 1573112 | 26089.8 |
| proline iminopeptidase | ATY41_04735 | Not Available | Negative | 1573281 - 1574240 | 35594.9 |
| hypothetical protein | ATY41_04740 | Not Available | Positive | 1574288 - 1574824 | 19372.6 |
| acyl-coa dehydrogenase | ATY41_04745 | Not Available | Negative | 1574889 - 1576955 | 74904.4 |
| atp-dependent dna helicase recq | ATY41_04750 | Not Available | Negative | 1577161 - 1579194 | 73352.1 |
| l-asparagine permease | ATY41_04755 | Not Available | Positive | 1579526 - 1581043 | 54312.5 |
| hypothetical protein | ATY41_04760 | Not Available | Positive | 1581131 - 1581739 | 20596.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
