Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_04665 | Not Available | Negative | 1558550 - 1559005 | 16113.6 |
| hypothetical protein | ATY41_04670 | Not Available | Negative | 1559112 - 1559546 | 15155.5 |
| hypothetical protein | ATY41_04675 | Not Available | Negative | 1559543 - 1561192 | 58943.4 |
| hypothetical protein | ATY41_04680 | Not Available | Negative | 1561559 - 1562191 | 22976.2 |
| hypothetical protein | ATY41_04685 | Not Available | Positive | 1562470 - 1564719 | 82078.2 |
| hypothetical protein | ATY41_04690 | Not Available | Positive | 1565081 - 1565581 | 16835.6 |
| asparagine synthetase b | ATY41_04695 | Not Available | Positive | 1565839 - 1567677 | 68309.2 |
| hypothetical protein | ATY41_04700 | Not Available | Negative | 1567687 - 1568100 | 14399.1 |
| hypothetical protein | ATY41_04705 | Not Available | Positive | 1568229 - 1568489 | 9648.09 |
| aldo/keto reductase | ATY41_04710 | Not Available | Positive | 1568774 - 1569814 | 37699.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
