Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_08585 | Not Available | Positive | 133751 - 134314 | 20445.5 |
| hypothetical protein | ATY41_08590 | Not Available | Negative | 134670 - 136394 | 56640.9 |
| nrdh-redoxin | ATY41_08595 | Not Available | Negative | 136531 - 136779 | 9133.86 |
| hypothetical protein | ATY41_08600 | Not Available | Negative | 136993 - 137208 | 7063.46 |
| hypothetical protein | ATY41_08605 | Not Available | Negative | 137256 - 137585 | 11365.5 |
| helicase | ATY41_08610 | Not Available | Positive | 139556 - 141721 | 78864.2 |
| hypothetical protein | ATY41_08615 | Not Available | Negative | 141837 - 142022 | 6899.4 |
| luxr family transcriptional regulator | ATY41_08620 | Not Available | Negative | 142064 - 142690 | 21597.1 |
| hypothetical protein | ATY41_08625 | Not Available | Negative | 142699 - 143889 | 41279.8 |
| hypothetical protein | ATY41_08630 | Not Available | Positive | 144032 - 144658 | 22229.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
