Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan lytic protein p45 | ATY41_04595 | Not Available | Negative | 1545236 - 1546510 | 43693.2 |
| cell wall-binding protein | ATY41_04600 | Not Available | Negative | 1546503 - 1547783 | 43082.4 |
| hypothetical protein | ATY41_04620 | Not Available | Negative | 1548441 - 1548938 | 18039.8 |
| hypothetical protein | ATY41_04625 | Not Available | Negative | 1550206 - 1550832 | 22456.9 |
| hypothetical protein | ATY41_04630 | Not Available | Negative | 1550829 - 1551584 | 26716.0 |
| hypothetical protein | ATY41_04635 | Not Available | Negative | 1551696 - 1552409 | 25434.5 |
| hypothetical protein | ATY41_04645 | Not Available | Negative | 1553849 - 1555483 | 54541.1 |
| hypothetical protein | ATY41_04650 | Not Available | Negative | 1555550 - 1556233 | 24349.0 |
| hypothetical protein | ATY41_04655 | Not Available | Negative | 1556361 - 1556987 | 21827.4 |
| hypothetical protein | ATY41_04660 | Not Available | Negative | 1557055 - 1557708 | 21682.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
