Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_04545 | Not Available | Negative | 1537663 - 1538148 | 17354.6 |
| hypothetical protein | ATY41_04550 | Not Available | Negative | 1538132 - 1538605 | 16242.4 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | ATY41_04555 | Not Available | Negative | 1538602 - 1539138 | 19137.0 |
| diguanylate cyclase | ATY41_04560 | Not Available | Negative | 1539135 - 1539515 | 13796.4 |
| dihydropteroate synthase | ATY41_04565 | Not Available | Negative | 1539499 - 1540311 | 28306.6 |
| gtp cyclohydrolase i | ATY41_04570 | Not Available | Negative | 1540308 - 1540883 | 19874.8 |
| cell division protein ftsh | ATY41_04575 | Not Available | Negative | 1540895 - 1542898 | 72287.1 |
| hypoxanthine phosphoribosyltransferase | ATY41_04580 | Not Available | Negative | 1542983 - 1543534 | 20231.5 |
| trna(ile)-lysidine synthetase | ATY41_04585 | Not Available | Negative | 1543551 - 1544627 | 36759.8 |
| inorganic pyrophosphatase | ATY41_04590 | Not Available | Positive | 1544681 - 1545172 | 18358.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
