Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_04435 | Not Available | Negative | 1510844 - 1511503 | 24397.2 |
| hypothetical protein | ATY41_04440 | Not Available | Negative | 1511936 - 1512706 | 26708.6 |
| 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase | ATY41_04445 | Not Available | Negative | 1512780 - 1513526 | 26185.9 |
| imidazole glycerol phosphate synthase subunit hish | ATY41_04450 | Not Available | Negative | 1513573 - 1514202 | 22362.4 |
| imidazoleglycerol-phosphate dehydratase | ATY41_04455 | Not Available | Negative | 1514199 - 1514801 | 21440.3 |
| aspartate aminotransferase | ATY41_04460 | Not Available | Negative | 1514798 - 1515913 | 39431.0 |
| hypothetical protein | ATY41_04465 | Not Available | Negative | 1516630 - 1516989 | 12074.5 |
| lexa repressor | ATY41_04470 | Not Available | Positive | 1517327 - 1518001 | 24507.4 |
| gntr family transcriptional regulator | ATY41_04475 | Not Available | Negative | 1518076 - 1518750 | 24524.4 |
| hypothetical protein | ATY41_04480 | Not Available | Positive | 1519017 - 1520246 | 42086.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
