Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna ligase | ATY41_04365 | Not Available | Positive | 1494446 - 1494784 | 12269.6 |
| hypothetical protein | ATY41_04370 | Not Available | Positive | 1494858 - 1495043 | 5923.64 |
| rna polymerase subunit sigma-70 | ATY41_04375 | Not Available | Negative | 1495106 - 1496017 | 34303.3 |
| ku protein | ATY41_04380 | Not Available | Negative | 1496224 - 1497102 | 31844.8 |
| hypothetical protein | ATY41_04390 | Not Available | Positive | 1499575 - 1500018 | 15438.9 |
| methionine abc transporter atp-binding protein | ATY41_04400 | Not Available | Negative | 1501439 - 1502101 | 23499.6 |
| methionine abc transporter atp-binding protein | ATY41_04405 | Not Available | Negative | 1502098 - 1503120 | 36364.7 |
| methionine abc transporter substrate-binding protein | ATY41_04410 | Not Available | Negative | 1503125 - 1504081 | 33166.7 |
| hypothetical protein | ATY41_04420 | Not Available | Positive | 1508478 - 1508684 | 7035.6 |
| hypothetical protein | ATY41_04425 | Not Available | Positive | 1508753 - 1509286 | 20446.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
