Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heat-shock protein | ATY41_04315 | Not Available | Negative | 1485679 - 1486623 | 33466.6 |
| glyoxalase | ATY41_04320 | Not Available | Positive | 1486751 - 1487131 | 13731.2 |
| prenyltransferase | ATY41_04325 | Not Available | Negative | 1487190 - 1488065 | 31142.3 |
| lycopene e-cyclase isoprenoid transferase b | ATY41_04330 | Not Available | Negative | 1488062 - 1488385 | 11349.4 |
| c50 carotenoid epsilon cyclase | ATY41_04335 | Not Available | Negative | 1488382 - 1488705 | 11751.9 |
| phytoene dehydrogenase | ATY41_04340 | Not Available | Negative | 1488702 - 1490291 | 56258.3 |
| phytoene synthase | ATY41_04345 | Not Available | Negative | 1490288 - 1491184 | 32213.8 |
| geranylgeranyl pyrophosphate synthase | ATY41_04350 | Not Available | Negative | 1491181 - 1492296 | 38366.6 |
| marr family transcriptional regulator | ATY41_04355 | Not Available | Positive | 1492366 - 1492872 | 18981.8 |
| nad(p)-dependent oxidoreductase | ATY41_04360 | Not Available | Negative | 1492847 - 1494337 | 54312.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
