Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramate--alanine ligase | ATY41_04160 | Not Available | Negative | 1451120 - 1452532 | 49642.5 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | ATY41_04165 | Not Available | Negative | 1452574 - 1453650 | 37407.3 |
| cell division protein ftsw | ATY41_04170 | Not Available | Negative | 1453647 - 1454921 | 44695.1 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | ATY41_04175 | Not Available | Negative | 1454821 - 1456374 | 54759.9 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | ATY41_04180 | Not Available | Negative | 1456371 - 1457486 | 39674.9 |
| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase | ATY41_04185 | Not Available | Negative | 1457483 - 1458910 | 49775.6 |
| udp-n-acetylmuramyl peptide synthase | ATY41_04190 | Not Available | Negative | 1458911 - 1460455 | 53907.6 |
| penicillin-binding protein | ATY41_04195 | Not Available | Negative | 1460467 - 1462209 | 61514.1 |
| hypothetical protein | ATY41_04200 | Not Available | Negative | 1462233 - 1462901 | 22807.1 |
| ribosomal rna small subunit methyltransferase h | ATY41_04205 | Not Available | Negative | 1462913 - 1463890 | 35517.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
