Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavin oxidoreductase | ATY41_04110 | Not Available | Positive | 1439608 - 1440123 | 18652.4 |
| dna polymerase iii subunit alpha | ATY41_04115 | Not Available | Negative | 1441091 - 1444606 | 129580.0 |
| rna pseudouridine synthase | ATY41_04120 | Not Available | Negative | 1444734 - 1445654 | 32855.1 |
| signal peptidase ii | ATY41_04125 | Not Available | Negative | 1445654 - 1446166 | 17965.9 |
| cell division protein | ATY41_04130 | Not Available | Negative | 1446237 - 1447058 | 29497.1 |
| hypothetical protein | ATY41_04135 | Not Available | Negative | 1447203 - 1447499 | 11197.2 |
| cell division protein sepf | ATY41_04140 | Not Available | Negative | 1447582 - 1448088 | 18378.8 |
| alanine racemase | ATY41_04145 | Not Available | Negative | 1448152 - 1448856 | 24929.8 |
| cell division protein ftsz | ATY41_04150 | Not Available | Negative | 1448822 - 1449997 | 39948.0 |
| cell division protein ftsq | ATY41_04155 | Not Available | Negative | 1450151 - 1451116 | 33966.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
