Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase | ATY41_08530 | Not Available | Positive | 125405 - 126262 | 29858.4 |
| hypothetical protein | ATY41_08535 | Not Available | Positive | 126351 - 127316 | 32360.7 |
| hypothetical protein | ATY41_08545 | Not Available | Positive | 128319 - 128804 | 16783.0 |
| hypothetical protein | ATY41_08550 | Not Available | Positive | 128814 - 129161 | 12435.9 |
| hypothetical protein | ATY41_08555 | Not Available | Positive | 129158 - 129664 | 18662.0 |
| hypothetical protein | ATY41_08560 | Not Available | Positive | 129734 - 130318 | 21218.3 |
| rnase iii inhibitor | ATY41_08565 | Not Available | Negative | 130383 - 130910 | 17962.4 |
| hypothetical protein | ATY41_08570 | Not Available | Negative | 130912 - 131190 | 10549.9 |
| cation-transporting atpase | ATY41_08575 | Not Available | Positive | 131249 - 131473 | 7519.01 |
| carbonate dehydratase | ATY41_08580 | Not Available | Positive | 131515 - 133602 | 70686.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
