Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit iv | ATY41_04060 | Not Available | Negative | 1430010 - 1430432 | 15493.9 |
| cytochrome ubiquinol oxidase subunit i | ATY41_04065 | Not Available | Negative | 1430437 - 1432185 | 64314.2 |
| cytochrome c oxidase subunit ii | ATY41_04070 | Not Available | Negative | 1432194 - 1433084 | 33304.9 |
| iron-sulfur cluster insertion protein erpa | ATY41_04075 | Not Available | Negative | 1433231 - 1433587 | 12576.7 |
| dipeptidase | ATY41_04080 | Not Available | Negative | 1433666 - 1435087 | 49352.1 |
| hypothetical protein | ATY41_04085 | Not Available | Positive | 1435131 - 1435727 | 22749.0 |
| duf4440 domain-containing protein | ATY41_04090 | Not Available | Positive | 1435729 - 1436607 | 31869.1 |
| dihydroorotate dehydrogenase 2 | ATY41_04095 | Not Available | Negative | 1436662 - 1437693 | 36077.0 |
| nrdr family transcriptional regulator | ATY41_04100 | Not Available | Negative | 1437720 - 1438193 | 17600.8 |
| histidinol dehydrogenase | ATY41_04105 | Not Available | Negative | 1438232 - 1439545 | 45049.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
