Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_12240 | Not Available | Negative | 1408856 - 1409893 | 39002.0 |
| hypothetical protein | ATY41_12245 | Not Available | Negative | 1409883 - 1410608 | 26929.3 |
| hypothetical protein | ATY41_12255 | Not Available | Negative | 1414579 - 1415010 | 15798.3 |
| hypothetical protein | ATY41_04020 | Not Available | Positive | 1417563 - 1418687 | 38192.6 |
| signal recognition particle | ATY41_04025 | Not Available | Negative | 1418753 - 1420324 | 55372.6 |
| hypothetical protein | ATY41_04030 | Not Available | Negative | 1420368 - 1420868 | 18138.1 |
| signal recognition particle-docking protein ftsy | ATY41_04035 | Not Available | Negative | 1420868 - 1421743 | 31121.4 |
| chromosome segregation protein smc | ATY41_04040 | Not Available | Negative | 1421840 - 1425385 | 128113.0 |
| threonine synthase | ATY41_04045 | Not Available | Positive | 1425500 - 1426909 | 51151.1 |
| abc transporter atp-binding protein | ATY41_04055 | Not Available | Negative | 1427625 - 1428533 | 32369.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
