Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombination protein recr | ATY41_03840 | Not Available | Positive | 1362680 - 1363276 | 21745.2 |
| aspartate kinase | ATY41_03845 | Not Available | Positive | 1363350 - 1364636 | 44936.8 |
| aspartate-semialdehyde dehydrogenase | ATY41_03850 | Not Available | Positive | 1364711 - 1365781 | 37006.0 |
| malate:quinone oxidoreductase | ATY41_03855 | Not Available | Positive | 1365974 - 1367404 | 52141.9 |
| dna repair photolyase | ATY41_03860 | Not Available | Positive | 1367562 - 1368605 | 38259.0 |
| hypothetical protein | ATY41_03865 | Not Available | Positive | 1368913 - 1369101 | 6682.12 |
| udp-glucose 6-dehydrogenase | ATY41_03880 | Not Available | Positive | 1370545 - 1371852 | 45587.4 |
| fmn reductase | ATY41_03890 | Not Available | Positive | 1373131 - 1373724 | 21049.0 |
| cell filamentation protein fic | ATY41_03895 | Not Available | Negative | 1377159 - 1378355 | 44884.6 |
| hypothetical protein | ATY41_03900 | Not Available | Negative | 1379218 - 1379772 | 19114.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
