Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_03780 | Not Available | Negative | 1350333 - 1350770 | 15546.2 |
| hypothetical protein | ATY41_03785 | Not Available | Negative | 1351544 - 1351762 | 8646.2 |
| hypothetical protein | ATY41_03790 | Not Available | Positive | 1351935 - 1352198 | 9610.74 |
| hypothetical protein | ATY41_03795 | Not Available | Positive | 1352195 - 1352413 | 7767.17 |
| xylulose kinase | ATY41_03800 | Not Available | Negative | 1352627 - 1354060 | 48364.0 |
| hypothetical protein | ATY41_03810 | Not Available | Negative | 1355192 - 1355740 | 20633.3 |
| hypothetical protein | ATY41_03820 | Not Available | Positive | 1356485 - 1356712 | 7777.16 |
| phosphate acetyltransferase | ATY41_03825 | Not Available | Positive | 1356714 - 1358843 | 74837.7 |
| acetate kinase | ATY41_03830 | Not Available | Positive | 1358840 - 1360033 | 41658.7 |
| dna polymerase iii subunit gamma/tau | ATY41_03835 | Not Available | Positive | 1360313 - 1362676 | 81030.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
