Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter | ATY41_03720 | Not Available | Positive | 1337847 - 1339532 | 61240.4 |
| hypothetical protein | ATY41_03725 | Not Available | Negative | 1339637 - 1340392 | 25134.7 |
| dtxr family transcriptional regulator | ATY41_03730 | Not Available | Negative | 1340533 - 1341201 | 24102.5 |
| hypothetical protein | ATY41_03735 | Not Available | Negative | 1341235 - 1342269 | 35936.9 |
| cystathionine gamma-synthase | ATY41_03740 | Not Available | Positive | 1342548 - 1343702 | 40047.9 |
| hypothetical protein | ATY41_03745 | Not Available | Negative | 1343825 - 1344031 | 7863.26 |
| hypothetical protein | ATY41_03750 | Not Available | Negative | 1344197 - 1344505 | 10710.6 |
| hypothetical protein | ATY41_03755 | Not Available | Negative | 1344526 - 1345206 | 24125.2 |
| hypothetical protein | ATY41_03770 | Not Available | Negative | 1349332 - 1349673 | 12129.2 |
| hypothetical protein | ATY41_03775 | Not Available | Negative | 1349670 - 1350260 | 20665.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
