Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase | ATY41_03660 | Not Available | Positive | 1326135 - 1327232 | 37975.1 |
| peptide abc transporter atp-binding protein | ATY41_03675 | Not Available | Negative | 1329855 - 1330526 | 23918.7 |
| hypothetical protein | ATY41_03680 | Not Available | Negative | 1330544 - 1332088 | 50599.2 |
| two-component system response regulator | ATY41_03685 | Not Available | Positive | 1332250 - 1333011 | 28200.8 |
| histidine kinase | ATY41_03690 | Not Available | Positive | 1333050 - 1334648 | 55882.9 |
| hypothetical protein | ATY41_03695 | Not Available | Positive | 1334645 - 1335430 | 28004.0 |
| 50s ribosomal protein l10 | ATY41_03700 | Not Available | Positive | 1335664 - 1336182 | 18316.9 |
| 50s ribosomal protein l7/l12 | ATY41_03705 | Not Available | Positive | 1336205 - 1336603 | 13545.0 |
| hypothetical protein | ATY41_03710 | Not Available | Negative | 1337150 - 1337404 | 9240.93 |
| hypothetical protein | ATY41_03715 | Not Available | Positive | 1337494 - 1337850 | 12367.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
