Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit sece | ATY41_03590 | Not Available | Positive | 1311759 - 1312031 | 10139.8 |
| antitermination protein nusg | ATY41_03595 | Not Available | Positive | 1312084 - 1313022 | 34291.8 |
| 50s ribosomal protein l11 | ATY41_03600 | Not Available | Positive | 1313143 - 1313574 | 14949.2 |
| 50s ribosomal protein l1 | ATY41_03605 | Not Available | Positive | 1313649 - 1314338 | 23790.7 |
| nadph:quinone reductase | ATY41_03615 | Not Available | Negative | 1316634 - 1317602 | 33245.8 |
| recombinase | ATY41_03620 | Not Available | Negative | 1317805 - 1318566 | 27702.8 |
| glutamine amidotransferase | ATY41_03640 | Not Available | Negative | 1322072 - 1322800 | 26756.9 |
| oxidoreductase | ATY41_03645 | Not Available | Negative | 1322804 - 1323952 | 40419.5 |
| rok family transcriptional regulator | ATY41_03650 | Not Available | Negative | 1324052 - 1325245 | 40770.9 |
| xylose isomerase | ATY41_03655 | Not Available | Positive | 1325455 - 1326138 | 23860.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
