Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_03530 | Not Available | Positive | 1300207 - 1301436 | 40327.4 |
| hypothetical protein | ATY41_03535 | Not Available | Negative | 1301417 - 1301653 | 8706.05 |
| catalase | ATY41_03540 | Not Available | Negative | 1301840 - 1303333 | 54710.3 |
| fur family transcriptional regulator | ATY41_03545 | Not Available | Negative | 1303347 - 1303790 | 15786.8 |
| sodium:proton antiporter | ATY41_03550 | Not Available | Negative | 1303957 - 1305684 | 62170.6 |
| ribonucleotide-diphosphate reductase subunit beta | ATY41_03555 | Not Available | Positive | 1306088 - 1306171 | 2907.34 |
| hypothetical protein | ATY41_03560 | Not Available | Positive | 1306290 - 1306736 | 15721.7 |
| acyl dehydratase | ATY41_03565 | Not Available | Positive | 1306736 - 1307161 | 14865.8 |
| udp-n-acetylenolpyruvoylglucosamine reductase | ATY41_03570 | Not Available | Positive | 1307196 - 1308332 | 39012.6 |
| hypothetical protein | ATY41_03575 | Not Available | Positive | 1308389 - 1309117 | 24390.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
