Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydropantoate 2-reductase | ATY41_08455 | Not Available | Negative | 113119 - 114177 | 36308.0 |
| hypothetical protein | ATY41_08460 | Not Available | Negative | 114264 - 115103 | 29613.0 |
| had family hydrolase | ATY41_08465 | Not Available | Negative | 115153 - 115842 | 23585.1 |
| gntr family transcriptional regulator | ATY41_08470 | Not Available | Negative | 115839 - 116603 | 27347.8 |
| hypothetical protein | ATY41_08480 | Not Available | Negative | 118220 - 118480 | 9574.69 |
| hypothetical protein | ATY41_08485 | Not Available | Positive | 118585 - 118809 | 7710.35 |
| trna pseudouridine synthase b | ATY41_08490 | Not Available | Positive | 118900 - 119802 | 31618.1 |
| hypothetical protein | ATY41_08495 | Not Available | Positive | 119834 - 120202 | 12813.2 |
| hypothetical protein | ATY41_08500 | Not Available | Positive | 120247 - 120729 | 17059.9 |
| bifunctional riboflavin kinase/fmn adenylyltransferase | ATY41_08505 | Not Available | Positive | 120726 - 121670 | 33970.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
