Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter permease | ATY41_03465 | Not Available | Positive | 1286276 - 1287199 | 33384.7 |
| sugar abc transporter permease | ATY41_03470 | Not Available | Positive | 1287196 - 1288023 | 30230.8 |
| hypothetical protein | ATY41_03475 | Not Available | Positive | 1288606 - 1289433 | 27700.5 |
| rpir family transcriptional regulator | ATY41_03480 | Not Available | Positive | 1289620 - 1290489 | 31278.1 |
| hypothetical protein | ATY41_03485 | Not Available | Positive | 1290486 - 1290935 | 15221.4 |
| hypothetical protein | ATY41_03490 | Not Available | Positive | 1291103 - 1292119 | 36066.1 |
| hypothetical protein | ATY41_03495 | Not Available | Positive | 1293039 - 1294319 | 46910.7 |
| hypothetical protein | ATY41_03500 | Not Available | Positive | 1294354 - 1294860 | 19090.3 |
| mfs transporter | ATY41_03505 | Not Available | Negative | 1295242 - 1296540 | 45776.7 |
| hypothetical protein | ATY41_03515 | Not Available | Positive | 1297101 - 1297664 | 20100.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
