Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_03405 | Not Available | Positive | 1268191 - 1268631 | 15433.1 |
| hypothetical protein | ATY41_03415 | Not Available | Positive | 1270885 - 1271673 | 29182.9 |
| dna methyltransferase | ATY41_03420 | Not Available | Positive | 1271700 - 1272893 | 44444.9 |
| hypothetical protein | ATY41_03430 | Not Available | Negative | 1273978 - 1275567 | 55618.7 |
| lysr family transcriptional regulator | ATY41_03435 | Not Available | Negative | 1275616 - 1276506 | 31587.9 |
| 1-pyrroline-5-carboxylate dehydrogenase | ATY41_03440 | Not Available | Positive | 1276673 - 1280320 | 130818.0 |
| two-component system sensor protein | ATY41_03445 | Not Available | Negative | 1280333 - 1281766 | 50388.4 |
| two-component system response regulator | ATY41_03450 | Not Available | Negative | 1281763 - 1282485 | 26159.5 |
| mfs transporter | ATY41_03455 | Not Available | Positive | 1283023 - 1284516 | 52604.1 |
| sugar abc transporter substrate-binding protein | ATY41_03460 | Not Available | Positive | 1285056 - 1286216 | 41643.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
