Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_12205 | Not Available | Negative | 1256342 - 1256689 | 12613.0 |
| transposase | ATY41_12210 | Not Available | Negative | 1256835 - 1257800 | 36264.3 |
| hypothetical protein | ATY41_12215 | Not Available | Positive | 1258717 - 1259358 | 22312.9 |
| dna methyltransferase | ATY41_12220 | Not Available | Positive | 1260736 - 1261593 | 31935.9 |
| hypothetical protein | ATY41_12225 | Not Available | Positive | 1261647 - 1262471 | 28189.1 |
| sodium:proton antiporter | ATY41_12230 | Not Available | Positive | 1262605 - 1263927 | 45881.7 |
| hypothetical protein | ATY41_03385 | Not Available | Positive | 1265928 - 1266197 | 9509.99 |
| hypothetical protein | ATY41_03390 | Not Available | Negative | 1266226 - 1266783 | 18963.4 |
| hypothetical protein | ATY41_03395 | Not Available | Positive | 1266907 - 1267854 | 33650.8 |
| hypothetical protein | ATY41_03400 | Not Available | Positive | 1267862 - 1268194 | 12281.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
