Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_12150 | Not Available | Negative | 1246510 - 1247505 | 34999.3 |
| hypothetical protein | ATY41_12155 | Not Available | Positive | 1247600 - 1248064 | 16460.3 |
| hypothetical protein | ATY41_12160 | Not Available | Negative | 1248067 - 1248288 | 7491.64 |
| marr family transcriptional regulator | ATY41_12170 | Not Available | Negative | 1250458 - 1250946 | 17648.9 |
| hypothetical protein | ATY41_12175 | Not Available | Negative | 1251578 - 1251913 | 11647.5 |
| hypothetical protein | ATY41_12180 | Not Available | Negative | 1252919 - 1253113 | 6994.29 |
| hypothetical protein | ATY41_12185 | Not Available | Negative | 1253138 - 1253446 | 10823.1 |
| luxr family transcriptional regulator | ATY41_12190 | Not Available | Positive | 1253618 - 1254253 | 22586.4 |
| hypothetical protein | ATY41_12195 | Not Available | Positive | 1254544 - 1254984 | 15381.5 |
| hypothetical protein | ATY41_12200 | Not Available | Negative | 1255318 - 1256238 | 31619.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
