Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | ATY41_12030 | Not Available | Negative | 1217482 - 1218936 | 53030.9 |
| phosphoenolpyruvate carboxykinase | ATY41_12035 | Not Available | Positive | 1219053 - 1220954 | 68663.4 |
| abc transporter | ATY41_12040 | Not Available | Negative | 1221099 - 1223021 | 67128.6 |
| hypothetical protein | ATY41_12050 | Not Available | Positive | 1224893 - 1225330 | 16723.7 |
| hypothetical protein | ATY41_12055 | Not Available | Negative | 1225480 - 1225680 | 7608.95 |
| hypothetical protein | ATY41_12065 | Not Available | Negative | 1226999 - 1227253 | 9008.1 |
| hypothetical protein | ATY41_12070 | Not Available | Negative | 1227384 - 1227920 | 18378.2 |
| glutamyl-trna amidotransferase | ATY41_12080 | Not Available | Negative | 1230165 - 1231664 | 53748.6 |
| glutamyl-trna amidotransferase | ATY41_12085 | Not Available | Negative | 1231664 - 1233211 | 53694.8 |
| glutamyl-trna amidotransferase | ATY41_12090 | Not Available | Negative | 1233229 - 1233525 | 10386.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
