Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protease 2 | ATY41_11970 | Not Available | Negative | 1200485 - 1202641 | 80281.8 |
| tetr family transcriptional regulator | ATY41_11975 | Not Available | Negative | 1202891 - 1203484 | 22378.5 |
| penicillin-binding protein | ATY41_11980 | Not Available | Negative | 1203570 - 1205882 | 81064.9 |
| transcriptional regulator | ATY41_11985 | Not Available | Negative | 1205940 - 1206407 | 17136.7 |
| hypothetical protein | ATY41_11990 | Not Available | Positive | 1206764 - 1207198 | 15037.5 |
| hypothetical protein | ATY41_11995 | Not Available | Positive | 1207273 - 1207848 | 20531.2 |
| hypothetical protein | ATY41_12000 | Not Available | Positive | 1207990 - 1209984 | 72988.2 |
| hypothetical protein | ATY41_12005 | Not Available | Positive | 1209981 - 1211477 | 54415.7 |
| 3-hydroxy-2-methylbutyryl-coa dehydrogenase | ATY41_12020 | Not Available | Positive | 1215676 - 1216437 | 25812.6 |
| hypothetical protein | ATY41_12025 | Not Available | Positive | 1216498 - 1217460 | 32603.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
