Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine methyltransferase | ATY41_08405 | Not Available | Negative | 99892 - 100389 | 17328.7 |
| hypothetical protein | ATY41_08410 | Not Available | Negative | 100541 - 102586 | 67403.0 |
| peptidase | ATY41_08415 | Not Available | Negative | 102583 - 104334 | 59904.3 |
| transcription elongation factor nusa | ATY41_08420 | Not Available | Positive | 105289 - 106287 | 36027.0 |
| nucleic-acid-binding protein | ATY41_08425 | Not Available | Positive | 106341 - 106601 | 9579.67 |
| translation initiation factor if-2 | ATY41_08430 | Not Available | Positive | 106695 - 109424 | 95144.5 |
| ribosome-binding factor a | ATY41_08435 | Not Available | Positive | 109501 - 109929 | 15501.3 |
| hypothetical protein | ATY41_08440 | Not Available | Positive | 110000 - 111460 | 53312.6 |
| hypothetical protein | ATY41_08445 | Not Available | Positive | 111361 - 112104 | 25823.5 |
| adenine glycosylase | ATY41_08450 | Not Available | Negative | 112196 - 113065 | 31272.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
