Trueperella bernardiae strain LCDC 89-0504

spheremicroaerophile

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Actinomycetales

Family

Actinomycetaceae

Genus

Trueperella

Description

Trueperella bernardiae strain LCDC 89-0504 is a Gram-positive, microaerophilic bacterium characterized by its spherical shape and non-motile nature. This strain has been identified as a member of the genus Trueperella, which is known for its relevance in various biological contexts, including its association with both humans (Homo sapiens) and other metazoans. This strain possesses a single replicon, indicating a streamlined genomic structure typical of many bacteria. Trueperella bernardiae is non-spore-forming, which suggests that it relies on other survival strategies in fluctuating environmental conditions rather than sporulation, a common trait among some bacterial species. The ecological role of Trueperella bernardiae may be significant given its association with metazoan hosts, including humans. Its microaerophilic oxygen requirement implies that it thrives in environments with limited oxygen availability, which could be relevant in certain niches within the human body or in animal hosts. Further research into the ecological interactions and potential pathogenicity of this strain could provide insights into its role in health and disease. The accession number for this strain is LNIZ00000000.1, which can be used for further genomic and phylogenetic studies. Understanding the characteristics and behaviors of Trueperella bernardiae could contribute to a broader comprehension of microbial dynamics in both human and animal health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderActinomycetales
FamilyActinomycetaceae
GenusTrueperella
SpeciesTrueperella bernardiae
Strainstrain LCDC 89-0504

Profile

Physiology
Gram staining propertiesPositive
Shapesphere
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trueperella bernardiae strain LCDC 89-0504


Gene Summary

Adenine Count

349931 bp

Thymine Count

351199 bp

Guanine Count

668862 bp

Cytosine Count

658882 bp

Genome Length

2028874 bp

Protein-coding Genes

1754 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidinol-phosphataseAQZ59_00844Q9K4B1Negative944250 - 94509530777.5
putative ribosome biogenesis gtpase rsgaAQZ59_00845B7V341Negative945159 - 94617536670.6
3-phosphoshikimate 1-carboxyvinyltransferaseAQZ59_00846A4FNI0Negative946162 - 94743344272.1
hypothetical proteinAQZ59_00847Not AvailableNegative947430 - 94789716074.7
hth-type transcriptional regulator lutrAQZ59_00848Not AvailableNegative948064 - 94882527867.4
putative d,d-dipeptide-binding periplasmic protein ddpa precursorAQZ59_00849P76128Positive948890 - 95047056085.3
glutathione transport system permease protein gsicAQZ59_00850Q8VQK4Positive950604 - 95155734485.6
oligopeptide transport atp-binding protein oppdAQZ59_00851Q8YDH0Positive951561 - 95364274793.8
oligopeptide transport atp-binding protein oppfAQZ59_00852P42065Positive953639 - 95444228892.3
4-hydroxy-tetrahydrodipicolinate synthaseAQZ59_00853B0R3D6Positive954452 - 95536632828.7

Displaying genes 861 – 870 of 1814 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

156 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da

Displaying 1–10 of 156 metabolites

Health Effects

No health effects information available for this bacterium.