Pedobacter sp. Leaf41

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. Leaf41 is a bacterial species characterized by the presence of flagella, which are structures that facilitate motility. This trait suggests that the organism is capable of movement, which may play a role in its ecological interactions and adaptability to different environments. Additionally, Pedobacter sp. Leaf41 has a single replicon, indicating that its genetic material is organized within one circular chromosome, a common feature among many bacteria that can influence its replication and stability. The taxonomic classification of Pedobacter sp. Leaf41 is supported by its unique accession number, LMLE00000000.1, which provides a reference for genomic information related to this strain. Understanding the genetic makeup and features of Pedobacter sp. Leaf41 can contribute to insights into its metabolic capabilities, ecological roles, and interactions with other microorganisms and the environment. In ecological contexts, the motility provided by flagella may enhance Pedobacter sp. Leaf41's ability to colonize various niches, particularly in soil or plant-associated environments where it can participate in nutrient cycling or plant-microbe interactions. The single replicon organization might also suggest a streamlined genome, potentially indicating an adaptation to specific ecological roles. Overall, the motility and genomic structure of Pedobacter sp. Leaf41 highlight its potential importance in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. Leaf41
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. Leaf41 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1484975 bp

Thymine Count

1489252 bp

Guanine Count

909273 bp

Cytosine Count

896822 bp

Genome Length

4780472 bp

Protein-coding Genes

4031 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospholipase c, phosphocholine-specificASE92_00460Not AvailableNegative115066 - 11759495086.5
lytic transglycosylaseASE92_00465Q5HRU2Negative117713 - 11911652998.4
glutamyl-trna amidotransferaseASE92_00470B3QYQ7Negative119287 - 12070851436.1
preprotein translocaseASE92_00475A6H2G3Negative120727 - 1209036236.79
twin-arginine translocation protein, tata/e family subunitASE92_00480Not AvailableNegative120939 - 12130113329.8
peptidase m23ASE92_00485Not AvailableNegative121348 - 12265248457.1
hypothetical proteinASE92_00490Not AvailableNegative122774 - 12356529313.5
hypothetical proteinASE92_00495Not AvailableNegative123543 - 12523763661.8
deoxyuridine 5'-triphosphate nucleotidohydrolaseASE92_00500B2RJH1Negative125327 - 12576115892.1
polysaccharide biosynthesis proteinASE92_00505Not AvailableNegative125812 - 12726355508.0

Displaying genes 91 – 100 of 4081 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

199 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 199 metabolites

Health Effects

No health effects information available for this bacterium.