Flavobacterium sp. Root901

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium sp. Root901 is characterized as a rod-shaped bacterium and possesses flagella, which indicates motility. The organism has a single replicon, suggesting a streamlined genetic structure that may facilitate efficient replication and adaptability within its environment. The genomic data for Flavobacterium sp. Root901 is cataloged under the accession number LMJB00000000.1, which provides a reference point for further genomic studies and comparisons within the Flavobacterium genus. The presence of flagella enhances the ability of Flavobacterium sp. Root901 to navigate through its habitat, which may include soil or aquatic environments, potentially influencing its ecological roles. This motility allows the bacterium to explore and colonize various niches, engaging in interactions with other microorganisms and contributing to nutrient cycling processes. Flavobacterium species are often associated with the decomposition of organic matter, highlighting their importance in ecological systems. The rod shape may also play a role in the bacterium's ability to adhere to surfaces, facilitating biofilm formation, which can enhance its survival and metabolic efficiency. Therefore, understanding the traits of Flavobacterium sp. Root901 offers insights into its ecological functions, particularly in nutrient cycling and the degradation of organic materials within its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium sp. Root901
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium sp. Root901
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium sp. Root901 contig_9, whole genome shotgun

Gene Summary

Adenine Count

1643895 bp

Thymine Count

1637354 bp

Guanine Count

849062 bp

Cytosine Count

855774 bp

Genome Length

4986332 bp

Protein-coding Genes

4192 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
short-chain dehydrogenaseASE21_05160P0AFP5Positive1294832 - 129563529272.1
arac family transcriptional regulatorASE21_05165Not AvailablePositive1295703 - 129662035032.8
isopropylmalate isomeraseASE21_05170A5FKC6Positive1297138 - 129853250331.1
3-isopropylmalate dehydrataseASE21_05175Q11NN7Positive1298695 - 129929122157.0
2-isopropylmalate synthaseASE21_05180Q8F3Q1Positive1299543 - 130106356614.8
3-isopropylmalate dehydrogenaseASE21_05185Q8A6M0Positive1301210 - 130227138535.2
rna-binding proteinASE21_05190P19682Negative1302394 - 130274112496.4
hypothetical proteinASE21_05195Not AvailableNegative1302867 - 130335818204.1
30s ribosomal protein s16ASE21_05200A5FKD9Positive1303548 - 130411720188.6
ribosome maturation factor rimmASE21_05205A5FKD8Positive1304133 - 130465720153.4

Displaying genes 1081 – 1090 of 4252 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

220 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 220 metabolites

Health Effects

No health effects information available for this bacterium.