Nocardioides sp. Root240

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Root240 is a bacterial strain characterized by a single replicon, indicating a streamlined genetic structure. The strain is cataloged under the accession number LMIT00000000.1, which facilitates its identification and study within microbial databases. Nocardioides species are known to inhabit various environments, often associated with soil and plant roots, which suggests a potential role in soil ecology and plant microbiomes. While specific ecological functions of Nocardioides sp. Root240 are not detailed, members of this genus are generally recognized for their ability to degrade complex organic compounds, contributing to nutrient cycling in their habitats. The presence of a single replicon may also imply a relatively simple regulatory mechanism for gene expression, which can be advantageous in adapting to environmental changes. This trait may enhance the strain's ability to thrive in specific niches, such as the rhizosphere, where interactions with plant roots can influence nutrient uptake and plant health. In summary, Nocardioides sp. Root240, with its single replicon, represents a potentially significant player in soil ecosystems, particularly in relation to organic matter decomposition and plant interactions. Further research could elucidate its specific roles and contributions to soil health and plant growth.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Root240
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Root240


Gene Summary

Adenine Count

734324 bp

Thymine Count

728982 bp

Guanine Count

1833159 bp

Cytosine Count

1834187 bp

Genome Length

5134593 bp

Protein-coding Genes

4673 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive190 - 1711Not Available
argininosuccinate lyaseASE20_00005A1SJJ4Negative299 - 172650670.1
23s ribosomal rnaNot AvailableNot AvailablePositive2136 - 5262Not Available
hypothetical proteinASE20_00010Not AvailableNegative1743 - 223417721.6
argininosuccinate synthaseASE20_00015A1SJJ3Negative2234 - 366452311.0
arginine repressorASE20_00020Q828A2Negative3661 - 417617981.4
ornithine carbamoyltransferaseASE20_00025B0RHD4Negative4173 - 509032365.6
5s ribosomal rnaNot AvailableNot AvailablePositive5403 - 5519Not Available
acetylornithine aminotransferaseASE20_00030Q828A3Negative5087 - 628341295.0
acetylglutamate kinaseASE20_00035A1SJI9Negative6280 - 722733138.9

Displaying genes 1 – 10 of 4726 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

348 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 348 metabolites

Health Effects

No health effects information available for this bacterium.