Phenylobacterium sp. Root77

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Caulobacterales

Family

Caulobacteraceae

Genus

Phenylobacterium

Description

Phenylobacterium sp. Root77 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella. The flagella enable motility, which may play a significant role in its ecological interactions and environmental adaptability. This organism has a single replicon, indicating a streamlined genetic organization that can be advantageous for efficient replication and cellular function. The accession number for this strain is LMIM00000000.1, which provides a reference for researchers seeking to access its genomic data. The ecological insights regarding Phenylobacterium sp. Root77 can be drawn from its traits as a motile, Gram-negative bacterium. Such characteristics suggest that it may inhabit diverse environments, potentially participating in biogeochemical cycles. Its rod shape and motility could facilitate nutrient acquisition and interaction with other microorganisms, which is crucial for its survival and ecological role. Overall, the traits of Phenylobacterium sp. Root77 highlight its potential importance in microbial communities and ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusPhenylobacterium
SpeciesPhenylobacterium sp. Root77
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Phenylobacterium sp. Root77
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phenylobacterium sp. Root77 contig_9, whole genome shotgun

Gene Summary

Adenine Count

686696 bp

Thymine Count

677406 bp

Guanine Count

1424153 bp

Cytosine Count

1469724 bp

Genome Length

4260023 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASE17_14230Not AvailablePositive3114183 - 311493826248.1
diadenosine tetraphosphate hydrolaseASE17_14235Not AvailableNegative3114935 - 311534514629.6
malate dehydrogenaseASE17_14240B7GW58Positive3115455 - 311644134735.7
hypothetical proteinASE17_14245Not AvailableNegative3116506 - 311721625061.2
acetyltransferaseASE17_14250Not AvailablePositive3117294 - 311783019729.3
succinyl-coa synthetase subunit betaASE17_14255B4RCH3Positive3118390 - 311958942209.8
succinate--coa ligaseASE17_14260Q1RH56Positive3119589 - 312046729787.4
2-oxoglutarate dehydrogenase subunit e1ASE17_14265A6WXF0Positive3120583 - 3123537109087.0
dihydrolipoamide succinyltransferaseASE17_14270Q8GCY1Positive3123598 - 312481542205.9
dihydrolipoamide dehydrogenaseASE17_14275P31046Positive3124897 - 312629448977.1

Displaying genes 3011 – 3020 of 4071 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

331 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 331 metabolites

Health Effects

No health effects information available for this bacterium.