Rhizobium sp. Root564

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Root564 is a rod-shaped bacterium characterized by the presence of flagella, which likely aids in its motility. This organism possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in its environment. The strain is cataloged under the accession number LMGN00000000.1, which provides a reference point for further research and study. Rhizobium species are well-known for their role in forming symbiotic relationships with leguminous plants, where they establish root nodules and fix atmospheric nitrogen. This interaction is crucial for enhancing soil fertility and promoting plant growth, particularly in nitrogen-poor soils. The specific traits of Rhizobium sp. Root564, including its morphology and motility, suggest it may be adapted for effective colonization of plant roots, which is essential for establishing the symbiotic relationship. Ecologically, the presence of Rhizobium sp. Root564 in various environments could contribute to improved soil nitrogen levels, benefiting agricultural practices and ecosystem health. Its ability to thrive in specific niches may also influence plant community dynamics, particularly in areas where legumes are predominant. Understanding the traits of this bacterium can inform future agricultural strategies aimed at sustainable farming and soil management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Root564
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Root564
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Root564


Gene Summary

Adenine Count

1077656 bp

Thymine Count

1086114 bp

Guanine Count

1521856 bp

Cytosine Count

1501625 bp

Genome Length

5187270 bp

Protein-coding Genes

4666 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive522618 - 522629Not Available
Putative lysozyme protein, glycoside hydrolase familyASD74_02355Not AvailableNegative525163 - 52575021291.9
hypothetical proteinASD74_02360Not AvailableNegative525713 - 5259589114.11
Putative transcriptional regulatorASD74_02365Not AvailableNegative525979 - 52714241569.6
Gp48, phage tail protein xASD74_02370Not AvailableNegative527145 - 5273577400.97
Phage-related tail proteinASD74_02375Not AvailableNegative527364 - 52782816455.5
hypothetical proteinASD74_02380Not AvailablePositive527896 - 52852222811.7
Putative tail proteinASD74_02385Not AvailableNegative528519 - 53065473652.0
hypothetical proteinASD74_02390Not AvailableNegative530777 - 5310499408.27
hypothetical proteinASD74_02395Not AvailablePositive531048 - 5312276716.95

Displaying genes 1 – 10 of 4785 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

305 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 305 metabolites

Health Effects

No health effects information available for this bacterium.