Flavobacterium sp. TAB 87

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium sp. TAB 87 is characterized as a rod-shaped bacterium that possesses flagella, indicating its motility. This motility can enhance its ability to navigate through various environments, potentially allowing it to colonize diverse ecological niches. The strain has a single replicon, which suggests a streamlined genomic organization that is common among many bacteria, facilitating efficient replication and maintenance of its genetic material. The accession number for Flavobacterium sp. TAB 87 is LLWK00000000.1, which is a unique identifier that can be used for further investigation and comparison with other bacterial strains within the Flavobacterium genus. This genus is known for its ecological roles, particularly in the degradation of organic materials in aquatic environments, contributing to nutrient cycling. The presence of flagella in Flavobacterium sp. TAB 87 may also play a role in its ecological interactions, as motility can influence its ability to access nutrients and evade predators. Understanding the traits of Flavobacterium sp. TAB 87 can provide insights into its potential applications in bioremediation or in the study of microbial dynamics in aquatic ecosystems. The capabilities of this bacterium could be vital in maintaining the health and balance of these environments, showcasing the importance of microbial diversity in ecological systems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium sp. TAB 87
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium sp. TAB 87
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium sp. TAB 87 contig000038, whole genome shotgun

Gene Summary

Adenine Count

1261718 bp

Thymine Count

1250629 bp

Guanine Count

649614 bp

Cytosine Count

665444 bp

Genome Length

3827405 bp

Protein-coding Genes

3323 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imidazole glycerol phosphate synthase subunit hishAP058_00610Q64RT0Negative661566 - 66214721403.8
histidine biosynthesis bifunctional protein hisbAP058_00611Q8ABA7Negative662223 - 66335942938.2
histidinol-phosphate aminotransferaseAP058_00612A5FFY0Negative663483 - 66452638893.8
histidinol dehydrogenaseAP058_00613Q5LAZ8Negative664537 - 66582346113.5
atp phosphoribosyltransferaseAP058_00614Q11TY6Negative665869 - 66672631397.3
hypothetical proteinAP058_00615Not AvailablePositive666816 - 6669716042.35
vit family proteinAP058_00616Q9P6J2Negative667261 - 66837939677.0
cation efflux system protein czcbAP058_00617P94176Negative668395 - 66951041035.8
cation efflux system protein czcaAP058_00618Not AvailableNegative669521 - 673855161015.0
sensor protein czcs precursorAP058_00619Q45614Negative673906 - 67530653202.4

Displaying genes 611 – 620 of 3372 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

156 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 156 metabolites

Health Effects

No health effects information available for this bacterium.