Lysinibacillus sp. ZYM-1

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Lysinibacillus

Description

Lysinibacillus sp. ZYM-1 is a bacterium characterized by possessing a single replicon, indicating a streamlined genomic structure. The genomic sequence for this organism is available under the accession number LKPY00000000.1, which provides a basis for further research and analysis. As a member of the Lysinibacillus genus, this species is likely to exhibit traits typically associated with this group, such as the ability to thrive in various environments, including soil and agricultural settings. Lysinibacillus species are known for their roles in nutrient cycling and potential applications in biocontrol and bioremediation, although specific traits of Lysinibacillus sp. ZYM-1 related to these functions are not detailed in the provided data. The presence of a single replicon in Lysinibacillus sp. ZYM-1 suggests a potential for efficient replication and resource allocation, which may enhance its adaptability and survival in diverse ecological niches. This trait may also indicate a reduced metabolic burden, allowing the bacterium to focus on growth and reproduction in its environment. Overall, the characteristics of Lysinibacillus sp. ZYM-1 highlight its potential significance in ecological processes, particularly in soil health and microbial interactions. Further studies could elucidate its specific roles and applications in agricultural and environmental microbiology.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusLysinibacillus
SpeciesLysinibacillus sp. ZYM-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysinibacillus sp. ZYM-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysinibacillus sp. ZYM-1


Gene Summary

Adenine Count

1531349 bp

Thymine Count

1530665 bp

Guanine Count

896498 bp

Cytosine Count

904331 bp

Genome Length

4862843 bp

Protein-coding Genes

4562 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive118 - 233Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive364 - 479Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive370 - 485Not Available
formate--tetrahydrofolate ligaseAO843_09720B9DN77Negative455 - 213460262.2
cold-shock proteinAO843_09725P41016Positive2347 - 25477454.65
hypothetical proteinAO843_09730Not AvailableNegative2654 - 343930555.2
oxygenaseAO843_09735P54990Positive3598 - 408317824.4
hypothetical proteinAO843_09740Not AvailableNegative4167 - 43737944.67
hypothetical proteinAO843_09745Not AvailableNegative4657 - 575141066.5
tetr family transcriptional regulatorAO843_09750Not AvailableNegative5735 - 633723050.7

Displaying genes 1 – 10 of 4649 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da

Displaying 1–10 of 248 metabolites

Health Effects

No health effects information available for this bacterium.