Pseudomonas cannabina pv. alisalensis strain ICMP 15200

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas cannabina pv. alisalensis strain ICMP 15200 is a bacterial pathogen characterized by a single replicon. It is associated with diseases in plants, specifically within the context of agricultural impacts. The strain is cataloged under the accession LJPP00000000.1, which provides a reference for genomic studies and further research. This particular pathovar, Pseudomonas cannabina, is known to affect cannabis plants, leading to significant concerns for crop health and yield. The limited number of replicons (one) suggests a streamlined genome, which could be indicative of its adaptation to specific environmental niches or host interactions. Understanding the genetic and pathogenic characteristics of Pseudomonas cannabina pv. alisalensis is crucial for developing management strategies to mitigate its impact on affected crops. The information provided by the strain's accession allows researchers to access genomic data that may reveal insights into its virulence factors, host range, and potential resistance mechanisms. In an ecological context, the presence of Pseudomonas cannabina pv. alisalensis in agricultural systems underscores the importance of monitoring plant pathogens that can impact crop production. Effective management of this pathogen may involve integrated pest management strategies that consider the ecological dynamics between pathogens, hosts, and the agricultural environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cannabina
Strainpv. alisalensis strain ICMP 15200

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cannabina pv. alisalensis strain ICMP 15200
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas cannabina pv. alisalensis strain ICMP 15200


Gene Summary

Adenine Count

1263896 bp

Thymine Count

1253540 bp

Guanine Count

1791366 bp

Cytosine Count

1792531 bp

Genome Length

6102102 bp

Protein-coding Genes

5117 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gene 56 proteinALO83_00999Not AvailablePositive313979 - 31428711779.1
Putative transposase orfbALO83_04043Not AvailablePositive314323 - 31461611317.8
Putative transposase orfbALO83_01000Q47718Positive314586 - 31492112470.8
Putative transposase orfbALO83_101675Q9JMS8Positive314834 - 31514812575.9
putative prophage pssb64-02, orf2ALO83_103911Not AvailableNegative315389 - 3155174612.48
Glycoside hydrolase family 19 proteinALO83_01001Not AvailableNegative316057 - 31660219551.5
Tail fiber proteinALO83_01002Not AvailableNegative316700 - 31812749779.1
Hypothetical proteinALO83_04044Not AvailableNegative318153 - 31888727517.5
hypothetical proteinALO83_101490Not AvailableNegative318833 - 31915311388.5
Tail fiber proteinALO83_01003Not AvailableNegative319150 - 322536119365.0

Displaying genes 1 – 10 of 5254 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

326 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 326 metabolites

Health Effects

No health effects information available for this bacterium.