Candidatus Paraburkholderia calva strain UZHbot6

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Candidatus Paraburkholderia calva strain UZHbot6 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility and potential adaptability to various environments. This strain contains one replicon, indicating a streamlined genetic structure that may facilitate efficient replication and adaptation to its ecological niche. The strain is cataloged under the accession number LFLF00000000.1, which provides a reference for genomic data and further study. The significance of the flagella in this bacterium can be linked to its ecological role, as motility often enhances a microorganism's ability to colonize new environments, access nutrients, and evade unfavorable conditions. Understanding the traits of Candidatus Paraburkholderia calva strain UZHbot6 contributes to the broader knowledge of the Burkholderia genus, particularly in how these organisms interact with their environments. The rod shape and flagella presence suggest that this strain may play an important role in soil or plant-associated ecosystems, where motility is critical for nutrient cycling and symbiotic relationships. Further research into this strain could illuminate its ecological functions and potential applications in bioremediation or plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesCandidatus Paraburkholderia calva
Strainstrain UZHbot6

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Paraburkholderia calva strain UZHbot6


Gene Summary

Adenine Count

810679 bp

Thymine Count

814701 bp

Guanine Count

1297847 bp

Cytosine Count

1285378 bp

Genome Length

4208605 bp

Protein-coding Genes

2002 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s ribosomal rnaNot AvailableNot AvailablePositive1 - 100Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive376 - 489Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive722 - 2199Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive1078 - 1191Not Available
hypothetical proteinBUMB_01387cNot AvailableNegative1843 - 20647871.78
16s ribosomal rnaNot AvailableNot AvailablePositive3461 - 4982Not Available
conserved putative protein creaBUMB_01402cP0AE93Negative8240 - 864114165.1
lactate-responsive regulator lldr in enterobacteria, gntr familyBUMB_01404cP0ACM1Negative8955 - 966526495.5
putative l-lactate dehydrogenase, iron-sulfur cluster-binding subunit ykgfBUMB_01406A4IK95Positive10214 - 1150047881.8
Trna-asnNot AvailableNot AvailablePositive13250 - 13325Not Available

Displaying genes 1 – 10 of 2056 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

188 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 188 metabolites

Health Effects

No health effects information available for this bacterium.