Helicobacter pylori strain UM196

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM196 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement and spirilla shape. This strain is notable for its single-cell arrangement and presence of flagella, which facilitate its movement within its host-associated habitat. It thrives optimally at a temperature of 37°C, indicating its mesophilic nature. UM196 is associated with a range of hosts, including Homo sapiens, Gallus gallus, Aves, various primates, Mammalia, Amoeba, Rodentia, Cricetinae, and Thais. The strain exhibits a free-living biotic relationship, yet it is primarily known for its pathogenicity in humans, contributing to several gastrointestinal diseases. The health effects linked to Helicobacter pylori strain UM196 include chronic gastric inflammation, gastric ulcers, and gastric cancer, among others. It is implicated in conditions such as chronic gastritis, peptic ulcer disease, and mucosa-associated lymphoid tissue (MALT) lymphoma. The strain is also associated with more severe outcomes, including gastric adenocarcinoma and duodenal ulcers. The pathogenicity of UM196 underscores its role in the development of various gastric ailments, highlighting the significance of monitoring and understanding this strain’s impact on human health. Its ability to induce chronic inflammatory responses may also provide insight into the ecological interactions between this bacterium and its hosts, emphasizing the need for further research into its mechanisms of disease and potential therapeutic targets.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain UM196

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain UM196
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain UM196


Gene Summary

Adenine Count

497738 bp

Thymine Count

505044 bp

Guanine Count

308406 bp

Cytosine Count

322103 bp

Genome Length

1633389 bp

Protein-coding Genes

1479 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive96 - 213Not Available
restriction endonuclease subunit rACM32_00005Q58611Positive289 - 257188749.1
n-6 dna methylaseACM32_00010Not AvailablePositive2561 - 419262216.1
restriction endonuclease subunit sACM32_00015Not AvailablePositive4185 - 522539833.3
Trna-proNot AvailableNot AvailablePositive5291 - 5368Not Available
polyphosphate kinaseACM32_00025O25654Positive5462 - 748977941.8
diguanylate cyclaseACM32_00030B2USR9Positive7526 - 858139011.5
proteaseACM32_00035O25656Positive8578 - 991250286.6
4-hydroxy-tetrahydrodipicolinate synthaseACM32_00040B6JL09Positive9927 - 1082933300.5
7-alpha-hydroxysteroid dehydrogenaseACM32_00045P71079Positive10826 - 1161428600.2

Displaying genes 1 – 10 of 1521 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

92 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 92 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 66 in total