Helicobacter pylori strain UM119

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM119 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and presence of flagella. It is known to exist in a free-living biotic relationship and typically inhabits the gastrointestinal tract of various hosts, including Homo sapiens, Gallus gallus, Aves, Primates, Mammalia, Amoeba, Rodentia, and Cricetinae. The strain replicates with a single replicon and has a double membrane structure. The optimal growth temperature for UM119 is 37°C, fitting within a mesophilic temperature range. This bacterium is primarily associated with a range of health effects, particularly in humans, including chronic gastric inflammation, gastric ulcers, and various forms of gastric cancer such as gastric adenocarcinoma and mucosa-associated lymphoid tissue (MALT) lymphoma. Other related gastrointestinal issues include functional dyspepsia, atrophic gastritis, and duodenal ulcers. Given its pathogenicity in humans, H. pylori strain UM119 plays a significant role in gastrointestinal diseases and has been linked to severe health outcomes, including peptic ulcer disease and cancer. The presence of this strain in a variety of hosts suggests a versatile ecological niche, enabling it to adapt to different environments while influencing host health. Understanding the pathogenic mechanisms and interactions of H. pylori strain UM119 could provide insights into its role in gastrointestinal diseases and potential therapeutic approaches.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain UM119

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain UM119
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain UM119


Gene Summary

Adenine Count

488433 bp

Thymine Count

486326 bp

Guanine Count

305015 bp

Cytosine Count

312114 bp

Genome Length

1592071 bp

Protein-coding Genes

1457 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive98 - 215Not Available
hypothetical proteinAC783_00005Not AvailableNegative340 - 70213514.4
initiator repb proteinAC783_00015Not AvailableNegative1896 - 319150424.2
hypothetical proteinAC783_00020Not AvailableNegative3824 - 410510334.5
phosphoesteraseAC783_00030O25683Positive6137 - 718040182.6
chemotaxis protein cheyAC783_00035O06978Negative7511 - 818225466.6
metallophosphoesteraseAC783_00040O25685Negative8531 - 964342271.8
acetyl-coa synthetaseAC783_00045Q1CUA3Positive9841 - 1182975053.4
ribosome maturation protein rimpAC783_00050B2USN6Negative11937 - 1237716643.1
ribosome-binding factor aAC783_00055B2USN5Negative12370 - 1270512551.2

Displaying genes 1 – 10 of 1499 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

94 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 94 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 66 in total