Sphingomonas endophytica strain NS334

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas endophytica strain NS334 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitates its motility. This strain operates optimally at a temperature of 29°C, placing it within the mesophilic temperature range. It is noted for having a single replicon, indicating a streamlined genomic organization, and is classified as non-spore-forming, suggesting that it does not produce spores as a mechanism for survival under adverse conditions. The strain is cataloged under the accession number LDTB00000000.1, which provides a means for researchers to access its genomic data for further studies. The aerobic nature of Sphingomonas endophytica implies that it requires oxygen for growth and metabolism, which is typical of its genus that often thrives in oxygen-rich environments. Ecologically, Sphingomonas species are known to play a role in biogeochemical cycles and can be involved in the degradation of environmental pollutants. The specific traits of Sphingomonas endophytica strain NS334 may contribute to its potential as a useful organism in bioremediation efforts or in the study of endophytic relationships in plants. Its ability to thrive at a moderate temperature and its aerobic lifestyle may allow it to inhabit a variety of ecological niches, influencing plant health and soil dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas endophytica
Strainstrain NS334

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas endophytica strain NS334
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas endophytica strain NS334


Gene Summary

Adenine Count

587302 bp

Thymine Count

585069 bp

Guanine Count

1228698 bp

Cytosine Count

1240585 bp

Genome Length

3641654 bp

Protein-coding Genes

3283 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinNS334_01165Not AvailablePositive232790 - 23328418191.6
hypothetical proteinNS334_01170Not AvailablePositive233271 - 23375918115.2
hypothetical proteinNS334_01175Not AvailablePositive233907 - 23440117797.0
Large packaging proteinNS334_01180Not AvailablePositive234398 - 23570545744.7
Portal proteinNS334_01185Q1RIH4Positive236101 - 23717738442.2
Hypothetical proteinNS334_01190Not AvailablePositive237174 - 23749110917.3
Putative prohead proteaseNS334_01195Not AvailablePositive237488 - 23785613147.0
Putative major capsid proteinNS334_01200Not AvailablePositive237886 - 23889935337.8
hypothetical proteinNS334_01205Not AvailablePositive239067 - 23957917234.7
hypothetical proteinNS334_01210Not AvailablePositive239749 - 24011713089.0

Displaying genes 1 – 10 of 3341 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

259 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 259 metabolites

Health Effects

No health effects information available for this bacterium.