Pseudomonas oryzihabitans strain SB14

RodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas oryzihabitans strain SB14 is a Gram-negative, rod-shaped bacterium that thrives in damp and humid environments, including farm settings, fresh water, and soil. This organism is known to inhabit specific niches such as rice paddies, sink drains, and respiratory devices, including mechanical ventilators. It is capable of aerobic respiration and possesses flagella, which contribute to its mobility. This strain has been associated with a variety of health effects in humans, including severe conditions such as bacteremia, pneumonia, and sepsis, as well as infections related to indwelling catheters and prosthetic devices. Additionally, it has demonstrated pathogenicity in plants, notably affecting crops like Oryza sativa (rice), Capsicum annuum (bell pepper), Cucumis melo (melon), and Capsicum chinense (hot pepper). The presence of Pseudomonas oryzihabitans in both clinical and agricultural settings underscores its ecological versatility and potential impact on human health and agriculture. Its ability to thrive in diverse environments, coupled with its pathogenic potential, highlights the importance of monitoring this strain in both clinical settings and agricultural practices, particularly in humid regions where it is likely to proliferate. Understanding the behavior and risks associated with Pseudomonas oryzihabitans strain SB14 is crucial for effective infection control and agricultural management strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas oryzihabitans
Strainstrain SB14

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pseudomonas oryzihabitans strain SB14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdamp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils
Biotic relationshipNot Available
Host(s)Homo sapiens, Oryza sativa, Capsicum annuum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman; Plant

Genome Summary

Pseudomonas oryzihabitans strain SB14


Gene Summary

Adenine Count

944412 bp

Thymine Count

937132 bp

Guanine Count

1721206 bp

Cytosine Count

1742460 bp

Genome Length

5345210 bp

Protein-coding Genes

4612 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail proteinSB14R_07655P51772Positive1692388 - 16926127839.35
HolinSB14R_07660Not AvailablePositive1692635 - 169294911312.7
Gp27SB14R_07665Not AvailablePositive1692946 - 169375829086.4
hypothetical proteinSB14R_07670Not AvailablePositive1693755 - 16939526901.13
Lysb family lysis regulatory proteinSB14R_07675Not AvailablePositive1693949 - 169438316047.3
Tail proteinSB14R_07680Not AvailablePositive1694479 - 169499418641.2
Tail proteinSB14R_07685Not AvailablePositive1695194 - 169611732562.7
Tail proteinSB14R_07690Not AvailablePositive1696110 - 169674523537.0
AttlNot AvailableNot AvailablePositive1696424 - 1696438Not Available
hypothetical proteinSB14R_07695Not AvailablePositive1696738 - 169830054143.9

Displaying genes 1 – 10 of 4744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

325 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 325 metabolites

Health Effects

Health ConditionRelationReference
SepticaemiaCausesPMC10277831
Prosthetic valve endocarditisCausesPMC10277831
PeritonitisCausesPMC10277831
Periorbital cellulitisCausesPMC10865052
SepsisCausesPMC5423562
BacteremiaCausesPMC5423562
PeritonitisCausesPMC5423562
EndophthalmitisCausesPMC5423562
Biliary tract infectionsCausesPMC5423562
MeningitisCausesPMC5423562

Displaying health effects 1 – 10 of 15 in total