Vibrio metoecus strain YB5B04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio metoecus strain YB5B04 is a notable member of the Vibrionaceae family, characterized by its unique genetic makeup. This strain has been documented with a single replicon, indicating its genomic organization features one circular chromosome. The genomic data for this strain is accessible under the accession number LBGP00000000.1, providing a resource for further genetic analysis and characterization. Vibrio metoecus, part of the Vibrio genus, is often associated with marine environments, suggesting a potential ecological role in coastal and marine ecosystems. The presence of only one replicon in strain YB5B04 might indicate streamlined genomic features, which can be advantageous for survival in fluctuating marine conditions. Understanding the genomic characteristics of Vibrio metoecus strain YB5B04 could provide insights into its adaptability and ecological functions. As a marine bacterium, it may contribute to biogeochemical cycles in its habitat, potentially influencing nutrient cycling and interactions within the marine microbiome. The exploration of its genomic traits could further elucidate its role in environmental dynamics and its interactions with other marine organisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio metoecus
Strainstrain YB5B04

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio metoecus strain YB5B04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio metoecus strain YB5B04


Gene Summary

Adenine Count

1076048 bp

Thymine Count

1072066 bp

Guanine Count

947320 bp

Cytosine Count

950134 bp

Genome Length

4045661 bp

Protein-coding Genes

3509 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Site-specific integraseXV92_00650Not AvailablePositive148420 - 14948740942.6
hypothetical proteinXV92_00655Not AvailableNegative149554 - 15000016176.7
Gp32XV92_00660Not AvailableNegative150003 - 15046717370.7
membrane proteinXV92_00665Not AvailableNegative150865 - 1510656825.26
Capsid and scaffold proteinXV92_00670Q9XJR2Negative151170 - 15162216667.0
hypothetical proteinXV92_00675Not AvailableNegative151755 - 15211112147.4
hypothetical proteinXV92_00680Not AvailableNegative152108 - 15288428041.7
hypothetical proteinXV92_00685Not AvailableNegative152884 - 15340817757.8
hypothetical proteinXV92_00690Not AvailableNegative153411 - 15372511867.5
hypothetical proteinXV92_00695Not AvailableNegative153778 - 1539936940.16

Displaying genes 1 – 10 of 3632 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

219 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 219 metabolites

Health Effects

No health effects information available for this bacterium.