Flavobacterium sp. 316

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium sp. 316 is a rod-shaped bacterium notable for its single flagellum, which facilitates motility. The organism is characterized by having one replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The genomic data for Flavobacterium sp. 316 can be accessed under the accession number JYGZ00000000.1. Flavobacterium species are often found in aquatic environments and are known for their role in the degradation of organic matter. This trait is particularly important in ecological contexts, as these bacteria contribute to nutrient cycling and the maintenance of ecosystem health. Their motility, enabled by the presence of flagella, allows them to navigate through their habitats effectively, potentially enhancing their capacity to colonize nutrient-rich areas. Understanding the specific traits of Flavobacterium sp. 316 may provide insights into its ecological role and its potential applications in biotechnology, particularly in bioremediation processes where the breakdown of organic pollutants is essential. The study of such microorganisms is critical in understanding the complex interactions within microbial communities and their functions in natural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium sp. 316
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium sp. 316
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium sp. 316 scaffold_16, whole genome shotgun sequence.

Gene Summary

Adenine Count

1382414 bp

Thymine Count

1402024 bp

Guanine Count

576201 bp

Cytosine Count

577520 bp

Genome Length

3971755 bp

Protein-coding Genes

3359 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna helicaseSY27_06185P37469Positive1332096 - 133364657556.4
hypothetical proteinSY27_06190Not AvailableNegative1333720 - 133423219357.0
hypothetical proteinSY27_06195Not AvailableNegative1334354 - 133494020779.1
methionyl-trna formyltransferaseSY27_06205Q5HBX2Negative1337383 - 133831835082.2
abc transporter substrate-binding proteinSY27_06210Not AvailableNegative1338320 - 133946843623.8
tail proteinSY27_06215Not AvailableNegative1339537 - 134009419357.9
tail proteinSY27_06220Not AvailableNegative1340127 - 134068419390.9
hypothetical proteinSY27_06225Not AvailablePositive1340907 - 134123611909.2
hypothetical proteinSY27_06230Not AvailablePositive1341428 - 134193420447.5
histidine kinaseSY27_06235Q1M799Positive1341924 - 134271530136.6

Displaying genes 1181 – 1190 of 3421 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

171 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm00007183-maleylpyruvateC7H4O6Chemical structure of 3-maleylpyruvateNot available
Average184.104Da
Monoisotopic184.001885009Da

Displaying 1–10 of 171 metabolites

Health Effects

No health effects information available for this bacterium.