Pedobacter lusitanus strain NL19

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter lusitanus strain NL19 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile, indicating that it does not possess the ability to move independently through its environment. Notably, it has true flagella, which are typically associated with motility in various bacterial species, though in this case, they do not confer mobility. The optimal growth temperature for Pedobacter lusitanus strain NL19 is 25°C, positioning it within the mesophilic temperature range. This adaptability allows it to thrive in moderate temperature environments, which are common in soil and aquatic habitats. The genomic structure of this strain includes a single replicon, indicating a streamlined genetic organization that may contribute to its metabolic efficiency and adaptability. The strain is cataloged under the accession number JXRA00000000.1, which provides a reference point for further genomic studies and comparisons with other microorganisms. From a biological and ecological perspective, the characteristics of Pedobacter lusitanus strain NL19 suggest it may play a role in nutrient cycling within its habitat. Its aerobic metabolism allows it to utilize oxygen, potentially aiding in the decomposition of organic matter and influencing the microbial community dynamics in its ecosystem. These traits highlight the importance of such microorganisms in maintaining ecological balance and supporting biological processes in their environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter lusitanus
Strainstrain NL19

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter lusitanus strain NL19
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter lusitanus strain NL19 Contig201, whole genome shotgun

Gene Summary

Adenine Count

1822156 bp

Thymine Count

1827867 bp

Guanine Count

1166337 bp

Cytosine Count

1171827 bp

Genome Length

5988187 bp

Protein-coding Genes

4579 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane proteinTH53_12845Not AvailablePositive2956446 - 295676312331.1
catalaseTH53_12850Not AvailablePositive2956880 - 295838857700.9
proline dehydrogenaseTH53_12855Not AvailableNegative2958703 - 295990845518.6
rna-binding protein s4TH53_12860Not AvailablePositive2959983 - 29601897606.37
3-dehydroquinate synthaseTH53_12865Not AvailablePositive2960189 - 296125639811.5
sterol desaturaseTH53_12870Not AvailablePositive2961246 - 296215135316.3
prephenate dehydrataseTH53_12875Not AvailablePositive2962479 - 296331231642.2
cytochrome c4TH53_12880Not AvailablePositive2963377 - 296451341795.5
3-phosphoshikimate 1-carboxyvinyltransferaseTH53_12885Not AvailablePositive2964659 - 296592145639.8
chorismate synthaseTH53_12890Not AvailablePositive2965985 - 296707638873.2

Displaying genes 2311 – 2320 of 4660 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.