Flavobacterium rivuli WB 3.3-2 = DSM 21788 strain WB 3.3-2

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium rivuli WB 3.3-2, also known as DSM 21788, is a Gram-negative, aerobic, non-motile bacterium characterized by its rod shape. This strain exhibits psychrotolerant properties, with an optimal growth temperature of 16°C, indicating its capacity to thrive in cooler environments. The presence of a single replicon suggests a streamlined genomic organization, which can be advantageous for adaptation to specific ecological niches. As a member of the Flavobacterium genus, this strain is likely to play a role in the decomposition of organic matter in aquatic environments, particularly in cold waters, where it may contribute to nutrient cycling. The ability to grow at low temperatures positions Flavobacterium rivuli WB 3.3-2 as an important organism in polar and temperate ecosystems, where it may interact with other microbial communities and influence the dynamics of these habitats. The strain is cataloged with the accession number JRLX00000000.1, providing a reference for future genomic studies. Its non-motile nature, coupled with aerobic metabolic requirements, suggests that it relies on passive transport mechanisms for nutrient acquisition in its environment. Overall, Flavobacterium rivuli WB 3.3-2 exemplifies how specific microbial traits can inform our understanding of ecological roles and interactions in cold aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium rivuli
StrainWB 3.3-2 = DSM 21788 strain WB 3.3-2

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium rivuli WB 3.3-2 = DSM 21788 strain WB 3.3-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium rivuli WB 3.3-2 = DSM 21788 strain WB 3.3-2


Gene Summary

Adenine Count

1347014 bp

Thymine Count

1358158 bp

Guanine Count

891032 bp

Cytosine Count

883768 bp

Genome Length

4479972 bp

Protein-coding Genes

3691 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane proteinQ765_00005Not AvailablePositive1 - 239587136.9
5s ribosomal rnaNot AvailableNot AvailablePositive160 - 268Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive226 - 3112Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive261 - 1786Not Available
membrane proteinQ765_00010Not AvailablePositive2407 - 390655670.0
hypothetical proteinQ765_00015Not AvailablePositive3920 - 547955813.2
laminarinaseQ765_00020Not AvailablePositive5487 - 713659240.8
beta-glucosidaseQ765_00025Not AvailablePositive7226 - 952683461.1
laminarinaseQ765_00030Not AvailablePositive9540 - 1030428821.3
3-deoxy-manno-octulosonate cytidylyltransferaseQ765_00035Not AvailableNegative10503 - 1122827286.8

Displaying genes 1 – 10 of 3740 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.