Flavobacterium daejeonense strain RCH33

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium daejeonense strain RCH33 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature, despite the presence of flagella. This strain thrives optimally at a temperature of 32°C, categorizing it as mesophilic, which indicates its preference for moderate temperature environments. Notably, Flavobacterium daejeonense strain RCH33 is non-spore-forming and possesses a single replicon, indicating a streamlined genetic organization. The presence of flagella, although the organism is non-motile, suggests potential adaptations for environmental interactions or signaling mechanisms rather than for locomotion. The organism's aerobic requirement implies that it relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions within microbial communities. Understanding the characteristics of Flavobacterium daejeonense strain RCH33 can provide insights into its ecological roles, particularly in environments where aerobic conditions prevail. Its mesophilic nature suggests it may play a significant role in nutrient cycling and organic matter decomposition at moderate temperatures, which are common in many habitats. This bacterium could be important in ecological settings such as soil or aquatic environments, where it may contribute to the dynamics of microbial communities and the degradation of organic materials. The accession number JRLG00000000.1 serves as a reference for further genomic studies, which could enhance knowledge of its functional capabilities and ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium daejeonense
Strainstrain RCH33

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium daejeonense strain RCH33
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium daejeonense strain RCH33 contig28, whole genome

Gene Summary

Adenine Count

1215060 bp

Thymine Count

1222847 bp

Guanine Count

672476 bp

Cytosine Count

645173 bp

Genome Length

3755556 bp

Protein-coding Genes

3178 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family proteinRCH33_1387Not AvailableNegative2167645 - 216924960222.2
tonb-linked outer membrane protein, susc/raga familyRCH33_1388Not AvailableNegative2169260 - 2172292111284.0
hypothetical proteinRCH33_1389Not AvailableNegative2172336 - 217373351562.9
response regulator receiver domain protein, putative transcriptional regulatorRCH33_1390Not AvailableNegative2174206 - 2178258154652.0
sss sodium solute transporterRCH33_1391Not AvailableNegative2178428 - 218011361326.3
hypothetical proteinRCH33_1392Not AvailablePositive2180295 - 21804566251.03
biotin-acetyl-coa-carboxylase ligaseRCH33_1393Not AvailableNegative2180498 - 218122626670.5
iojap proteinRCH33_1394Q9KD89Positive2181323 - 218169414002.7
atp-dependent zinc metalloprotease ftshRCH33_1395A6LD25Positive2181713 - 218363870950.2
hypothetical proteinRCH33_1396Not AvailablePositive2183749 - 218435123117.1

Displaying genes 1881 – 1890 of 3242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

153 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 153 metabolites

Health Effects

No health effects information available for this bacterium.