Escherichia coli 1-392-07_S4_C1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 1-392-07_S4_C1 is a Gram-negative, facultative anaerobic bacterium characterized by its rod shape and mobility, attributed to the presence of flagella. It typically exists in pairs or as single cells. This strain thrives optimally at 37°C, which aligns with its classification as mesophilic, indicating it prefers moderate temperature ranges for growth. The bacterium is host-associated, suggesting it may inhabit specific hosts, yet it maintains a free-living biotic relationship, allowing it to survive independently of a host organism. E. coli 1-392-07_S4_C1 has a singular replicon and is composed of two membranes, which is characteristic of Gram-negative bacteria. The presence of flagella not only facilitates mobility but also enables the bacterium to adapt to various environments, potentially aiding its survival in both host-associated and free-living scenarios. The adaptability of E. coli strains like 1-392-07_S4_C1 illustrates their ecological versatility, enabling them to thrive in diverse habitats and conditions. Understanding the traits of E. coli 1-392-07_S4_C1 can provide insights into its ecological roles and interactions within microbial communities, particularly in terms of its adaptability to different environments and relationships with hosts. Accessions for this strain are cataloged under JOSK00000000.1, providing a reference point for further research and study.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain1-392-07_S4_C1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 1-392-07_S4_C1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 1-392-07_S4_C1


Gene Summary

Adenine Count

1432497 bp

Thymine Count

1434984 bp

Guanine Count

1465484 bp

Cytosine Count

1472341 bp

Genome Length

5805306 bp

Protein-coding Genes

6039 genes

Non-Coding Genes

351 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
LysozymeAC84_0296Not AvailablePositive295959 - 29638115669.8
Gene 63 proteinAC84_0297Not AvailablePositive296393 - 29681515697.7
Hypothetical proteinAC84_0298Not AvailablePositive296803 - 2969555782.38
hypothetical proteinAC84_0299Not AvailableNegative297258 - 29768916482.6
Terminase small subunitAC84_0300Not AvailablePositive297710 - 29826120486.8
Terminase large subunitAC84_0301Not AvailablePositive298264 - 29988661494.0
Putative portal proteinAC84_0302Not AvailablePositive299886 - 30135254768.9
Putative head morphogenesis proteinAC84_0303Not AvailablePositive301447 - 30197719513.1
Putative head proteinAC84_0304Not AvailablePositive301992 - 30321244187.9
Hypothetical proteinAC84_0305Not AvailablePositive303216 - 30372217796.1

Displaying genes 1 – 10 of 6390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.