Escherichia coli 5-366-08_S1_C1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 5-366-08_S1_C1 is a gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It typically exists in pairs or as single cells and is associated with host organisms, indicating a potential symbiotic or commensal relationship. The optimal growth temperature for E. coli 5-366-08_S1_C1 is 37°C, which falls within the mesophilic temperature range. This temperature preference aligns with the typical conditions found in the intestines of warm-blooded hosts, where many E. coli strains are commonly found. The strain possesses a single replicon and is surrounded by two membranes, a characteristic feature of gram-negative bacteria. Its free-living biotic relationship suggests that while it may be associated with hosts, it can also survive independently in various environments. Understanding the traits of E. coli 5-366-08_S1_C1 offers insights into its ecological roles, particularly in host-associated environments. Its ability to adapt to varying oxygen levels and its optimal growth temperature indicate its versatility and potential contributions to microbial communities within host organisms, as well as its implications for human health and disease. The accession number for this strain is JOQU00000000.1, allowing for further research and exploration of its genetic and functional characteristics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain5-366-08_S1_C1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 5-366-08_S1_C1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 5-366-08_S1_C1


Gene Summary

Adenine Count

1344186 bp

Thymine Count

1347041 bp

Guanine Count

1397804 bp

Cytosine Count

1357304 bp

Genome Length

5446335 bp

Protein-coding Genes

5124 genes

Non-Coding Genes

540 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail componentAB08_0001Not AvailablePositive1 - 108939131.1
Trna-val;Not AvailableNot AvailablePositive7 - 82Not Available
Trna-lys;Not AvailableNot AvailablePositive86 - 161Not Available
Trna-met;Not AvailableNot AvailablePositive99 - 175Not Available
Trna-gln;Not AvailableNot AvailablePositive118 - 192Not Available
Trna-val;Not AvailableNot AvailablePositive80 - 155Not Available
Trna-met;Not AvailableNot AvailablePositive208 - 284Not Available
Trna-ile;Not AvailableNot AvailablePositive261 - 337Not Available
Trna-val;Not AvailableNot AvailablePositive202 - 277Not Available
Trna-lys;Not AvailableNot AvailablePositive308 - 383Not Available

Displaying genes 1 – 10 of 5664 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.