Escherichia coli 5-366-08_S1_C3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 5-366-08_S1_C3 is a Gram-negative, rod-shaped bacterium that is typically found in host-associated environments. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic conditions. It is motile and possesses flagella, which facilitates its movement through its habitat. The optimal growth temperature for E. coli 5-366-08_S1_C3 is 37°C, placing it within the mesophilic temperature range, which is conducive to the growth of many bacteria that inhabit warm-blooded hosts. This strain has a single replicon and features a double-membrane structure, characteristic of Gram-negative bacteria. In terms of its ecological role, E. coli 5-366-08_S1_C3 is classified as free-living, indicating that it can survive independently in its environment, although it is often associated with hosts. This ability suggests that it may play significant roles in nutrient cycling and microbial interactions within its habitat. The strain is cataloged under the accession number JONE00000000.1, which provides a reference for its genetic and phenotypic characteristics. Understanding the traits of E. coli 5-366-08_S1_C3 enhances our knowledge of the microbial diversity within host-associated environments and underscores the importance of such bacteria in ecological and health-related contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain5-366-08_S1_C3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 5-366-08_S1_C3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 5-366-08_S1_C3


Gene Summary

Adenine Count

1345956 bp

Thymine Count

1339870 bp

Guanine Count

1375807 bp

Cytosine Count

1379281 bp

Genome Length

5440914 bp

Protein-coding Genes

5072 genes

Non-Coding Genes

558 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Single-stranded dna binding proteinAB67_0107Not AvailablePositive111408 - 11183314984.7
Prop proteinAB67_0108Not AvailablePositive111870 - 11241220387.5
putative prophage proteinAB67_0109Not AvailablePositive112403 - 1126519897.88
Major capsid protein precursorAB67_0110Not AvailablePositive112925 - 11407042535.4
Head maturation proteaseAB67_0111Not AvailablePositive114120 - 11468021039.8
Portal proteinAB67_0112Not AvailablePositive114682 - 11589645242.9
Head-tail connector proteinAB67_0113Not AvailablePositive115889 - 11619111331.5
P58AB67_0114Not AvailablePositive116383 - 1166319485.14
Terminase small subunitAB67_0115Not AvailablePositive116920 - 11727613399.8
Terminase large subunitAB67_0116Not AvailablePositive117260 - 11892162139.1

Displaying genes 1 – 10 of 5630 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.