Flavobacterium gilvum strain EM1308

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium gilvum strain EM1308 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and possesses flagella, which may play a role in its life cycle or environmental interactions despite lacking mobility. The optimal growth temperature for F. gilvum strain EM1308 is 29°C, placing it within the mesophilic temperature range suitable for growth in moderately warm environments. This strain has a single replicon, which indicates a streamlined genomic organization that may facilitate efficient replication and adaptation to environmental conditions. The accession number for this strain is JNCP00000000.1, which provides a reference for further genomic studies or comparisons with related bacterial strains. The ecological implications of F. gilvum strain EM1308 may be significant, particularly in the context of nutrient cycling and biodegradation processes in its natural habitat. As a member of the Flavobacteriaceae family, it is likely involved in the degradation of complex organic materials, contributing to the health of ecosystems where it resides. Its aerobic nature suggests a role in processes that require oxygen, potentially influencing the dynamics of microbial communities in various ecological niches.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium gilvum
Strainstrain EM1308

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium gilvum strain EM1308
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium gilvum strain EM1308 contig00215, whole genome

Gene Summary

Adenine Count

1402858 bp

Thymine Count

1401907 bp

Guanine Count

770024 bp

Cytosine Count

747181 bp

Genome Length

4321991 bp

Protein-coding Genes

3661 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium transporterFEM08_32510Not AvailablePositive3862507 - 386419561472.8
sos response transcriptional repressor, reca-mediated autopeptidaseFEM08_32520Not AvailableNegative3864460 - 386490016516.9
sos mutagenesis and repair protein umucFEM08_32530Not AvailableNegative3864891 - 386616548627.4
oxidoreductaseFEM08_32540Not AvailableNegative3866441 - 386742136538.1
dsba oxidoreductaseFEM08_32550Not AvailableNegative3867429 - 386814527194.0
regulatory protein arsrFEM08_32560Not AvailableNegative3868225 - 386867717135.8
dna-damage-inducible protein dFEM08_32570Not AvailableNegative3868791 - 386963632176.5
nadh-quinone oxidoreductase subunit nFEM08_32580Not AvailableNegative3870010 - 387138049408.0
hypothetical proteinFEM08_32590Not AvailablePositive3871633 - 387276943955.8
hypothetical proteinFEM08_32600Not AvailableNegative3872785 - 387480679072.6

Displaying genes 3291 – 3300 of 3706 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.